Pharmaceutical Organic Chemistry 1 - Unit 3


Syllabus

Alkyl halides*

SN1 and SN2 reactions - kinetics, order of reactivity of alkyl halides, stereochemistry and rearrangement of carbocations. SN1 versus SN2 reactions, Factors affecting SN1 and SN2 reactions Structure and uses of ethylchloride, Chloroform, trichloroethylene, tetrachloroethylene, dichloromethane, tetrachloromethane and iodoform.


Alcohols*

Qualitative tests, Structure and uses of Ethyl alcohol, Methyl alcohol, chlorobutanol, Cetosteryl alcohol, Benzyl alcohol, Glycerol, Propylene glycol



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POC-1ST

UNIT-3


SYLLABUS + IMPORTANT QUESTIONS

Alkyl halides

  • SN1SN_1 and SN2SN_2 Reactions
  • kinetics, order of reactivity, stereochemistry and rearrangement of carbocations.
  • SN1SN_1 VS SN2SN_2 reactions, factor affecting SN1SN_1 and SN2SN_2 reactions.
  • Structure and uses of ethyl chloride, chloroform, trichloroethylene, tetrachloroethylene, dichloromethane, tetrachloromethane and iodoform.

Alcohols

  • Qualitative tests, structure and uses of ethyl alcohol, Methyl alcohol, chlorobutanol, cetostearyl alcohol, Benzyl alcohol, Glycerol, Propylene glycol.

ALKYL HALIDES

These are those organic compound that contain a halogen atom ($F, Cl, Br, I$) bonded to an alkyl group (a hydrocarbon chain).

General structure:

Screenshot 2026-03-13 125709

Also known as Haloalkanes or Halogen alkanes.

Other examples \rightarrow

Screenshot 2026-03-13 125747

Types of Alkyl halides

It is of mainly three types:

  1. Primary halides :
  • They contains a primary alkyl group bonded to a halogen.
  • In this, carbon attached with only one alkyl group/carbon chain, so it is primary halides.

Screenshot 2026-03-13 125809


  1. Secondary halides :
  • They contains a secondary alkyl group bonded to a halogen.
  • Carbon attached with two other carbon chain/alkyl group, so it is secondary.

Screenshot 2026-03-13 125820


  1. Tertiary halides :
  • They contains a tertiary alkyl group ($R_3C-$) bonded to a halogen.
  • Carbon attached with three other carbon chain/alkyl group.

Screenshot 2026-03-13 125826


Method of Preparations

  1. from Alkenes \rightarrow They can be prepared by the addition of hydrogen halides / halogens to the carbon-carbon double bond.

Screenshot 2026-03-13 125839

  1. Hunsdiecker reactions \rightarrow When silver salt of carboxylic acid react with bromine in the presence of CCl4CCl_4 produce Alkyl bromides.

Screenshot 2026-03-13 125847

  1. From alkanes \rightarrow

Screenshot 2026-03-13 125903

  1. Halogen exchange (Finkelstein Reactions) \rightarrow

Screenshot 2026-03-13 125924

Properties

  • Polar covalent bond b/w the alkyl group and halogen due to electrophile nature of halogen.
  • Highly reactive towards nucleophilic substitution Reactions ($SN_1$ & $SN_2$).
  • Boiling point increases with mol. weight & size.
  • Soluble in organic solvents.

SN1SN_1 AND SN2SN_2

SN \rightarrow Nucleophilic Substitution Reactions.

  • These are those in which a nucleophile (negatively charged) replaces a leaving group (functional group) in a molecules.
  • It form a new covalent bond b/w nucleophile and molecules.

Screenshot 2026-03-13 125938

Types \rightarrow

There are two main types of nucleophilic substitution reactions

  1. SN1SN_1 (Substitution Nucleophilic Unimolecular)
  2. SN2SN_2 (Substitution Nucleophilic Bimolecular)

SN1SN_1 REACTIONS

  • SN1SN_1 represents Unimolecular Substitution Nucleophilic reactions.
  • It is unimolecular so it follow first-order kinetics i.e. it is depends on the concentration of substrate.
  • It is a type of reaction, which include two-step mechanism.
  • tertiary alkyl halides are more reactive towards this reactions.

Screenshot 2026-03-13 125956

Mechanism \rightarrow

  • It is two step mechanism in which first step is rate-determining step.

Screenshot 2026-03-13 130557

Step 1: It involves the formation of carbocation intermediate. It is slow and rate-determining step.

Screenshot 2026-03-13 130620

Step 2: It involves the formation of product in which Nucleophile ($Nu^-$) attacks the carbocation. It is fast.

Screenshot 2026-03-13 130633

Note:- Since, the first-step is slow and rate-determing, the overall reaction/rate of reaction depends only on the substrate.

Kinetics \rightarrow SN1SN_1 reaction follow the first-order kinetics, because in SN1SN_1 reactions the rate of reactions depends only on the concentration of the substrate. Rate (R) = K[RX]K [RX] Where:

  • R = Rate of reaction
  • K = Rate constant
  • [RX] = concentration of substrate (Alkyl halides) e.g. If we double the substrate concn, it double the (R).

Order of Reactivity \rightarrow SN1SN_1 reactions follow 3>2>13^\circ > 2^\circ > 1^\circ

  • In SN1SN_1 reaction, order of reactivity depends on the stability of carbocation.
  • Nucleophile attacks on the more stable carbocations.

Factor affecting SN1SN_1 reactions

  • Substrate \rightarrow Tertiary > Secondary > Primary (due to carbocation stability).
  • Leaving Group \rightarrow Good leaving group facilitate SN1SN_1 reactions. I>Br>Cl>FI > Br > Cl > F.
  • Nucleophile \rightarrow weak nucleophile (H_2O, R-OH, NH_3$) favor $SN_1.
  • Solvent \rightarrow Polar, protic solvent ($H_2O, ROH$) facilitate SN1SN_1 reactions.

SN2SN_2 REACTIONS

  • SN2SN_2 represents Bimolecular Nucleophilic substitution reaction.
  • It is Bimolecular, so it follow second order kinetics i.e. it depends on the concentration of both (substrate & Nucleophile).
  • It involve one step mechanism.
  • Primary alkyl halides are more reactive towards SN2SN_2 reactions. Order of reactivity: 1>2>31^\circ > 2^\circ > 3^\circ

Mechanism \rightarrow

  • It is the single step mechanism, in which nucleophilic attack on the substrate are the rate-determining step. (slow).

Screenshot 2026-03-13 130655

  • Firstly Nucleophile ($OH^-$) approaches the substrate from the backside.
  • Simultaneous, formation of new bond between the nucleophile and the substrate (partially bonded) and breaking the bond between the substrate and leaving group (partially broken).
  • Due to this, transition state formed. It is pentacoordinate, trigonal bipyramidal intermediate.
  • At last, chlorine departed/removed and product formed.

Kinetics \rightarrow Second-order kinetics: Rate depends on substrate [S] and Nucleophilic concentration [Nu]. R = K[S][Nu]K [S] [Nu] where:

  • R = rate of reactions.
  • K = rate constant
  • [S] = concentration of substrate
  • [Nu] = concentration of nucleophile

Order of Reactivity \rightarrow

  • Primary alkyl halides are more reactive toward SN2SN_2 reactive due to less stearic hindrance.

Screenshot 2026-03-13 130709

factor affecting SN2SN_2 reactions

  • Substrate \rightarrow Primary substrates are more reactive than tertiary substrates due to less steric hindrance.
  • Leaving Group \rightarrow Good leaving groups ($I > Br > Cl$) increase rate.
  • Nucleophile \rightarrow Strong nucleophile (OH^-, CN^-$) favors $SN_2 reactions.
  • Solvent \rightarrow Polar, aprotic solvents (Acetone) facilitate SN2SN_2 reactions.
  • Steric hindrance \rightarrow Increased steric hindrance decreases rate of reaction of SN2SN_2.

SN1SN_1 VS SN2SN_2

SN1SN_1SN2SN_2
• Two-step mechanism• One-step mechanism
• First order kinetics• Second order kinetics
• Order of reactivity 3>2>13^\circ > 2^\circ > 1^\circ• Order of reactivity 1>2>31^\circ > 2^\circ > 3^\circ
• Unimolecular reactions• Bimolecular reactions
• Weak nucleophiles favor SN1SN_1 mechanism• Strong nucleophiles favor SN2SN_2 mechanism

STRUCTURE AND USES (Alkyl Halides)

1. Chloroform

  • It is a colorless, sweet-smelling organic compounds that is a Trihalomethane.
  • It is used as solvent in various industrial and laboratory applications.
  • Historically, it was used as general anesthetics.

Screenshot 2026-03-13 130725

2. Iodoform

  • Tri-iodomethane, methyl tri-iodide.
  • It is used as disinfectant and antiseptic in medicines.
  • Antimicrobial agents.

Screenshot 2026-03-13 130732

3. Trichloroethylene

  • It is used as a solvent for cleaning and degreasing metal parts, equipments, textiles.
  • It also act as refrigerant.
  • also used as solvent in pharmaceuticals.

ALCOHOLS

These are a class of organic compounds that contain hydroxyl ($-OH$) functional group attached to a carbon atom.

General structure \rightarrow

ROHR-OH where R is an alkyl group (carbon chain).

Types

  1. Primary Alcohols (1^\circ$) $\rightarrow One alkyl group are attached with carbon, which bonded to OH-OH group.

Screenshot 2026-03-13 130816

  1. Secondary Alcohols ($2^\circ$) \rightarrow Two alkyl groups are attached with carbon bonded to OH-OH group.

Screenshot 2026-03-13 130823

  1. Tertiary Alcohols (3^\circ$) $\rightarrow Three alkyl groups are attached with carbon bonded to OH-OH group.

Screenshot 2026-03-13 130831


QUALITATIVE TESTS FOR ALCOHOLS

These are those chemical tests which are used to identify the presence or absence of alcohol in a sample. It is of followings:-

  1. Sodium Metal tests
  2. Lucas tests
  3. Ceric Ammonium Nitrate test
  4. Iodoform tests
  5. Victor meyer test

1. Sodium Metal tests When Alcohols reacts with active metals (e.g. Sodium), it liberate hydrogen gas ($H_2$) in the form of effervescence.

Screenshot 2026-03-13 130845

2. Lucas tests When Alcohols reacts with Zinc chloride ($ZnCl_2$) and Hydrochloric acid ($HCl$), it produce or formed cloudy layer or precipitate. (Alkyl halides)

Screenshot 2026-03-13 130857

  • 11^\circ alcohols \rightarrow reacts slowly / no reaction
  • 22^\circ alcohols \rightarrow reacts moderately.
  • 33^\circ alcohols \rightarrow reacts quickly.

3. Ceric Ammonium Nitrate test When alcohol reacts with ceric ammonium nitrate, it forms red colored alkoxy cerium (IV) compound.

Screenshot 2026-03-13 130908

4. Iodoform test When Alcohols warm with sodium hydroxide and iodine, it forms a yellow ppt of iodoform.

Screenshot 2026-03-13 130930

5. Victor Mayer test When Alcohols reacts with sodium nitrite ($NaNO_2$) and sulfuric acid ($H_2SO_4$), it formed a colored solution/precipitate. $R-OH + NaNO_2 + H_2SO_4 \rightarrow R-ONO + NaHSO_4$

  • 11^\circ Alcohols \rightarrow Red color.
  • 22^\circ Alcohols \rightarrow Blue color
  • 33^\circ Alcohols \rightarrow Green color

STRUCTURE AND USES (Alcohols)

1. Glycerol - From Alkyl halides.

  • It is used as a solvent for cleaning and degreasing metal parts, equipments, textiles.
  • It also act as refrigement.
  • also used as solvent in pharmaceuticals.

Screenshot 2026-03-13 130952

2. Glycerol

  • Also known as glycerine or glycerin. It is colorless, odorless and viscous liquid with sweet taste.
  • widely used in skin lotions, mouth washes, cough medicines, drug solvents, serum, vaccines and suppositories.

Screenshot 2026-03-13 130957

3. Ethyl Alcohol / Ethanol

Screenshot 2026-03-13 131011

  • Used as solvent in pharmaceuticals.
  • Used as solvent, preservatives.
  • Disinfectant and Antiseptic.
  • Also used in production of plastic fibers and other chemicals.

4. Benzyl Alcohol

Screenshot 2026-03-13 131018

  • Used as solvent, preservatives, and flavaring agents.
  • Also used in skincare products, soops and lotions.
  • Antiseptic, antifungal, anti-bacterial agent.

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Unit 3, Pharmaceutical Organic Chemistry 1, B Pharmacy 2nd Sem, Carewell Pharma
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